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December 14, 2021

Genome Assembly of MRSA using Oxford Nanopore MinION Data

In this training you’re going to make an assembly of data produced by “Complete Genome Sequences of Eight Methicillin-Resistant Staphylococcus aureus Strains Isolated from Patients in Japan” from Hikichi et al. 2019 which describes: Methicillin-resistant Staphylococcus aureus (MRSA) is a major pathogen causing nosocomial infections, and the clinical manifestations of MRSA range from asymptomatic colonization of the nasal mucosa to soft tissue infection to fulminant invasive disease. Here, we report the complete genome sequences of eight MRSA strains isolated from patients in Japan. In this tutorial you will learn how to make a genome assembly by using Galaxy on ONT long read data.

Document

Bazante Sanders, Saskia Hiltemann, Helena Rasche

December 14, 2021

Genome Assembly of MRSA using Illumina MiSeq Data

In this training you’re going to make an assembly of data produced by “Complete Genome Sequences of Eight Methicillin-Resistant Staphylococcus aureus Strains Isolated from Patients in Japan” from Hikichi et al. 2019 which describes: Methicillin-resistant Staphylococcus aureus (MRSA) is a major pathogen causing nosocomial infections, and the clinical manifestations of MRSA range from asymptomatic colonization of the nasal mucosa to soft tissue infection to fulminant invasive disease. Here, we report the complete genome sequences of eight MRSA strains isolated from patients in Japan. In this tutorial you learn to use Galaxy to assemble and analyze the sequencing data from these strains.

Document

Bazante Sanders, Saskia Hiltemann, Helena Rasche

October 26, 2021

Open Education webinar (2021 - slides)

This set of slides is used for the interactive workshop "Redesign, enrich and transform your course with open educational resources" developed and delivered at the University of Groningen (UG). Promo text: Intended audience: University teachers, PhD students with teaching responsibilities, education specialists Duration: 2 hours + 30-minute Q&A session Format: Interactive webinar Platform: Blackboard Collaborate The subject of open educational resources (OER) is becoming more prominent in higher education, especially in times of transition to Open Science and a need to switch to blended forms of teaching and learning. As an instrumental tool in reusing existing and creating innovative learner-centered resources, OER are an interesting area to explore for UG teachers. Would you like to try new and interesting things in your teaching? Do you need some inspiration, practical tools and support with redesigning your courses, making them more open and up-to-date? Information specialists from the University of Groningen Library and didactic experts from Education Support & Innovation will host a webinar focused on helping you redesign and enrich your course (in whole or in part) with open materials. During this interactive webinar, we will work alongside you and provide: Didactic advice Expertise in the area of open education and copyright Tips for finding high-quality open educational resources Help with exploring all the cool things that can be done with reusable and open materials Course redesign tools Platform for discussions Inspiration Your participation won’t just benefit your own course and development – you will also help us better understand your needs, so we can work on developing new services and infrastructure to make your teaching life easier. Learning Outcomes After completing this workshop, you will be able to: Understand how to use OER, basics of the copyright and open licenses Search strategically for and evaluate OER most relevant to your subject area Design appropriate teaching and learning activities using OER

Presentation

Mira Buist-Zhuk, Frederiek van Rij

May 12, 2020

11 RUG-Webinar Redesigning Your Course with OER (pdf)

Dit materiaal is gebruikt in het SURF stappenplan ontwikkeling workshop 'Herontwerp je onderwijs met leermaterialen van anderen'. Een workshop ter stimulering van het gebruik van open leermaterialen (OER). Onderwijsinstellingen die de workshop zelf hebben gegeven worden gestimuleerd om hun materialen ook te delen: De presentatiesheets van de workshop bij de Rijksuniversiteit Groningen.

Document

Mira Zhuk, Raquel Raj, Frederiek van Rij, Michel Jansen, Lieke Rensink